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Workflomics
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pubmetric
Library for citation network based quality control of autogenerated workflows.
https://workflomics.readthedocs.io/en/latest/developer-guide/pubmetric.html
Apache License 2.0
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Improve the workflomics visualisation of the metrics
#48
vedran-kasalica
opened
3 weeks ago
2
Add input path option to score_workflow API
#47
Ambivalentalfa
opened
3 weeks ago
0
Solving issues and removing old files from the repo
#46
Ambivalentalfa
opened
1 month ago
1
API age error and unordered visualisation fix
#45
Ambivalentalfa
closed
1 month ago
1
Keep the order of the tools in benchmakrs
#44
vedran-kasalica
closed
3 weeks ago
1
An updated version that supports all Workflomics tools (disregarding the topicID)
#43
vedran-kasalica
opened
1 month ago
0
Update to `poetry` and setup a docker image
#42
vedran-kasalica
opened
1 month ago
0
CITATION.cff abstract
#41
Ambivalentalfa
opened
2 months ago
1
config file for the API scheduler
#40
Ambivalentalfa
opened
2 months ago
0
Need to add src to all paths to import pubmetric
#39
Ambivalentalfa
opened
2 months ago
0
Document CWL file
#38
Ambivalentalfa
opened
2 months ago
0
Finish implementation of "workflomics" in pubmetric.data.download_domain_annotations.
#37
Ambivalentalfa
closed
2 months ago
0
Update README.md
#36
magnuspalmblad
closed
2 months ago
0
API - how old and new data is handled
#35
Ambivalentalfa
closed
2 months ago
0
API workflow creation tool set
#34
Ambivalentalfa
closed
2 months ago
0
API tests
#33
Ambivalentalfa
closed
2 months ago
0
Update readme
#32
Ambivalentalfa
opened
2 months ago
3
Move the full domain annotations to pubmetric repo
#31
Ambivalentalfa
closed
2 months ago
0
Reference the documentation where files of certain scemas are used
#30
Ambivalentalfa
closed
2 months ago
0
Delete old development notebooks and testing data
#29
Ambivalentalfa
closed
2 months ago
2
Update schema validator
#28
Ambivalentalfa
closed
2 months ago
0
Improvements to dataset generation, metrics, and efficient graph handling
#27
Ambivalentalfa
closed
2 months ago
1
Read CWLs without storing them
#26
Ambivalentalfa
opened
2 months ago
2
Rename the output folder to have a descriptive name (that is used as a constant)
#25
Ambivalentalfa
closed
2 months ago
1
Rename score_workflows to score_workflow
#24
Ambivalentalfa
closed
2 months ago
0
Create cff file and add author names
#23
Ambivalentalfa
closed
2 months ago
0
API controller, and changes to graph and worfklow structure
#22
Ambivalentalfa
closed
2 months ago
0
Adding documentation to all functions
#21
Ambivalentalfa
closed
4 months ago
0
Determine what to return within metrics if no edge is present, or if tools are not in network
#20
Ambivalentalfa
closed
2 months ago
1
To split ratings - use method that simply rounds up (or down)
#19
Ambivalentalfa
closed
2 months ago
1
Create a separate Python module named `tests/example_network.py`
#18
Ambivalentalfa
closed
2 months ago
0
Renaming to something other than "QCmetric"?
#17
magnuspalmblad
closed
2 months ago
3
Streamline package installation and add GitHub Actions for testing
#16
vedran-kasalica
closed
4 months ago
0
Workflow parsing, added metrics and a json metadatafile
#15
Ambivalentalfa
closed
4 months ago
0
europepmc method allows max 1000 citations
#14
Ambivalentalfa
closed
4 months ago
0
Set up a GitHub action
#13
Ambivalentalfa
closed
2 months ago
2
Update requirements and readme
#12
Ambivalentalfa
closed
2 months ago
1
rename package
#11
Ambivalentalfa
closed
2 months ago
0
Extract finished methods to the package
#10
Ambivalentalfa
closed
4 months ago
0
Rework methods: break up large methods, return single data strucutre
#9
Ambivalentalfa
closed
2 months ago
1
Add descriptions of the methods
#8
Ambivalentalfa
closed
2 months ago
6
Merging test branch
#7
Ambivalentalfa
closed
5 months ago
0
importing functions + uploading sample workflows
#6
Ambivalentalfa
closed
6 months ago
0
Including more tools using doi to pmid conversion
#5
Ambivalentalfa
closed
6 months ago
0
added metric evaluation and .cwl file parsing
#4
Ambivalentalfa
closed
6 months ago
0
Jupyter notebook version of the pipeline
#3
Ambivalentalfa
closed
6 months ago
0
Setup a Jupyter notebook to demonstrate `QC-metric` functionalities
#2
vedran-kasalica
closed
5 months ago
0
readme and requirements
#1
Ambivalentalfa
closed
7 months ago
0