Include more working docker images (to support cwl tool execution)

Workflomics / tools-and-domains

Containers to package the required sofware for executing CWL workflows

Apache License 2.0

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Include more working docker images (to support cwl tool execution) #27

Open vedran-kasalica opened 9 months ago

vedran-kasalica commented 9 months ago

We can either look at this list, but we should discuss a set of tools that are not difficult to implement but would allow more diverse workflows.

Each tool should include a workflow example + data to run it.

Feel free to edit the following list to make a final list:

[ ] XTandem
[ ] gProfiler
[ ] idconvert
[ ] mzRecal
[ ] protXml2IdList
[ ] SHIC - GitHub repo
[ ] Sage
[ ] Sage output conversion
[ ] ...

magnuspalmblad commented 9 months ago

I would like to include Sage (https://github.com/lazear/sage), as it is fast/state-of-the-art. However, we need to make a converter for the output to get it into mzIdentML (I asked the developer, but he wasn't too keen on it...).