<?xml version="1.0" encoding="UTF-8"?>
<tool name="Lambda" version="1.0.2 (Git commit )" docurl="http://www.seqan.de" category="" >
<executableName>lambda</executableName>
<description>the Local Aligner for Massive Biological DatA</description>
<manual>Lambda is a local aligner optimized for many query sequences and searches in protein space. It is compatible to BLAST, but much faster than BLAST and many other comparable tools.
Detailed information is available in the wiki: <https://github.com/seqan/lambda/wiki>
</manual>
produces via convert.py cwl
#!/usr/bin/env cwl-runner
# This CWL file was automatically generated using CTDConverter.
# Visit https://github.com/WorkflowConversion/CTDConverter for more information.
baseCommand: lambda
class: CommandLineTool
cwlVersion: v1.0
doc: "Lambda is a local aligner optimized for many query sequences and searches in\
\ protein space. It is compatible to BLAST, but much faster than BLAST and many\
\ other comparable tools.\nDetailed information is available in the wiki: <https://github.com/seqan/lambda/wiki>\n\
\n\n\nFor more information, visit http://www.seqan.de"
which could be as
#!/usr/bin/env cwl-runner
# This CWL file was automatically generated using CTDConverter.
# Visit https://github.com/WorkflowConversion/CTDConverter for more information.
baseCommand: lambda
class: CommandLineTool
cwlVersion: v1.0
doc: |
Lambda is a local aligner optimized for many query sequences and searches in
protein space. It is compatible to BLAST, but much faster than BLAST and many
other comparable tools.
Detailed information is available in the wiki: https://github.com/seqan/lambda/wiki
For more information, visit http://www.seqan.de
From
lamda --write-ctd
produces via
convert.py cwl
which could be as