Open mr-c opened 3 years ago
Not sure. AFAIK, we generate our galaxy node wrappers using CTD and we have some galaxy workflows. Would this help?
GTN has a few workflows included that worked last time we used them. However, those are training workflows.
Not sure. AFAIK, we generate our galaxy node wrappers using CTD and we have some galaxy workflows. Would this help?
Yes, any workflow that uses CTD-derived tool descriptions would be useful!
Yep. All OpenMS tools for version > 2.5 are derived from CTD (99.9% automatically with a few [2] exceptions where patches are used). The workflows @timosachsenberg is working on should use the latest version of these tools.
@timosachsenberg can you link me to your workflows? Is there (small) testing data?
Metabolite_Adduct _Grouping
WF: https://usegalaxy.eu/u/annalefarova/w/metaboliteadduct-grouping History: https://usegalaxy.eu/u/annalefarova/h/metaboliteadductgrouping Data: https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Tutorials/Data/latest/Example_Data/Metabolomics/
Proteomics_LFQ
WF: https://usegalaxy.eu/u/annalefarova/w/proteomicslfq Data: 1) https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Tutorials/Data/latest/Example_Data/Labelfree/datasets/ 2) https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Tutorials/Data/latest/Example_Data/Labelfree/databases/s_pyo_sf370_potato_human_target_decoy_with_contaminants.fasta
@timosachsenberg , Oliver said you might have some Galaxy workflows that used the output of CTDConverter?