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WormBase / caltech-curation-services

Modular curation services for Caltech WormBase data
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Dockerize gene descriptions pipeline #32

Closed valearna closed 11 months ago

valearna commented 1 year ago

Pull code from separate repo and create command to run the pipeline manually

valearna commented 1 year ago

Add it to jenkins

valearna commented 11 months ago

Save all files to a folder that is accessible by Ranjana and via web (/usr/caltech_curation_files/ranjana/gene_descriptions). Ace files should be deposited to /usr/caltech_curation_files/Data_for_citace/Data_from_Ranjana/. Do not overwrite ace files but save them with dates. Wen deletes the folder periodically.

valearna commented 11 months ago

The pipeline is now dockerized and it writes files to /usr/caltech_curation_files/pub/gene_descriptions, so that they are available at the following url: https://caltech-curation.textpressolab.com/files/pub/gene_descriptions/