Acedb segfault on large queries

WormBase / caltech-curation-services

Modular curation services for Caltech WormBase data

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Acedb segfault on large queries #56

Closed valearna closed 9 months ago

valearna commented 1 year ago

Acedb (both tace and xace) crashes with a segmentation fault error when running large queries. This happens only on AWS. When running the docker image on my laptop with ubuntu as host OS everything works as expected. Tested using ubuntu server 22.04 instead of Amazon Linux on AWS EC2 and no segfault error there. We need to migrate both dev and prod to new EC2 instances with ubuntu as host OS.

valearna commented 1 year ago

Steps to follow to install new instance (currently installing dev):

[x] create new instance
[x] install docker
[x] install apache, certbot and copy letsencrypt files
[x] set up certbot auto renewal
[x] copy caltech_curation_files to new instance
[x] copy tazendra password file
[x] copy shared .env file
[x] deploy curation container
[x] restore db from dump
[x] assign elastic ip to new instance

valearna commented 1 year ago

done. Ready to test