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WormBase / pseudoace

Modelling the WormBase ACeDB database in datomic.
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Missing motif entities? #76

Closed sibyl229 closed 4 years ago

sibyl229 commented 6 years ago

It seems that some motif entity can't be found in the datomic database (ws260).

ws260 acedb has the (AAAA)n motif

[:find ?e :where [?e :motif/id "(AAAA)n"]] gets no results.

mgrbyte commented 6 years ago

As discussed on our recent call, this is due to Motif objects that only have populated attributes that link to homology data. The CSV report in wormbase directory in our S3 for WS260 shows the following counts for Motif:

ACeDB datomic Missing Added Identical
Motif motif 23416 0 69269

We decided on the call to de-prioritise development on widgets that link to homology data until we find a solution for integrating that data.

mgrbyte commented 4 years ago

This I believe has been solved; reason is entities in the database that have no other attributes other than ID are not converted by the migration process. Motif entities with just an ID (Name in ACeDB) and homology would be dropped.

Please re-open if this is not the case.