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WormLabCaltech / alaska

Automated and friendly RNA-seq analysis (deprecated)
http://alaska.caltech.edu
MIT License
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Add additional data information in SOFT file #37

Closed Lioscro closed 5 years ago

Lioscro commented 5 years ago

An example is here https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1561394.

Also the SOFT file specification for RNA-seq here https://www.ncbi.nlm.nih.gov/geo/info/soft-seq.html and information about processed data files here https://www.ncbi.nlm.nih.gov/geo/info/seq.html#processed.

Specifically, we need to add the following labels: !Sample_data_processing - Description of the data processing steps & software (including versions) !Sample_supplementary_file - One for every processed data file !Sample_processed_data_files_format_and_content - One for every processed data file, in tandem with !Sample_supplementary_file, describing the format and content of the file. Unclear how detailed it needs to be. @dangeles?

Lioscro commented 5 years ago

Also, for SERIES: !Series_overall_design

Lioscro commented 5 years ago

Implemented in #39. Will merge soon.