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WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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DRAM on clustered amino acid sequences #192

Closed eray-sahin closed 2 years ago

eray-sahin commented 2 years ago

Hello,

I have the predicted amino acid sequences which have been predicted through prodigal and clustered through mmseqs to get the representative sequences. Is it possible to skip the prodigal in DRAM and use annotation on those sequences?

Best regards

eray-sahin commented 2 years ago

Dear @rmFlynn replied to this issue on [https://github.com/WrightonLabCSU/DRAM/issues/191#issuecomment-1202819378] as;

_"Yes DRAM.py annotate_genes -i your.faa is the approximate command DRAM.py annotate_genes --help for more information. It skips making the gen bank file and is faster than the traditional method. It is not adequately documented."_

Best,