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WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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Apparently you are using only the best hit for CAZy . is there a better option? #252

Open SilasK opened 1 year ago

SilasK commented 1 year ago

https://github.com/WrightonLabCSU/DRAM/blob/ac83ba7c6ed081c68abca6290be55a6ba7d28865/mag_annotator/summarize_genomes.py#L45

rmFlynn commented 1 year ago

In my opinion, yes, but this is safer in theory, and so it is sorta a pick of convenience for scientific defensibility. There is no option to switch it out but, you can change that column name to any column that exits and that lambda to any lambda that will parse it into a list. You can also add subfamily EC from DBcan. That is probably the easiest way to get what you want.

rmFlynn commented 1 year ago

Oh, and we only match to the dbCAN family, not the subfamily.