Is --gene_ko_link_loc necessary if I used --kegg_loc ?

WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

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Is --gene_ko_link_loc necessary if I used --kegg_loc ? #284

Closed mol529 closed 11 months ago

mol529 commented 1 year ago

Hello! I have been trying to set up the DRAM databases with KEGG. The gene sequence names in the KEGG database file only contain gene Entry, like this: >melm:C7H73_11415 It doesn't contain the KO number. Must I specify a gene_ko_link file ?

jrr-microbio commented 1 year ago

See this entry for help relating to KEGG database formatting: https://github.com/WrightonLabCSU/DRAM/issues/305