scikit-bio release 0.5.9 brings up ImportError.

[SebaSilvaS]

Hello! I would like to point out the new release of scikit-bio (from two weeks ago). It has an incompatibility with scipy 1.8.1, raising the following error:

ImportError: cannot import name 'ConstantInputWarning' from 'scipy.stats' (~/envs/DRAM/lib/python3.10/site-packages/scipy/stats/init.py)`

EDIT: There are conflicts if 0.5.8 is set explicitly in the environment.yaml. Could anyone share a working environment yaml file, please?

[Kekananen]

Setting scikit-bio to 0.5.6 explicitly solved this issue for me.

[778055611]

I try to modify the yaml file like the following,then ,I solved this question

channels:
  - conda-forge
  - bioconda
dependencies:
  - python==3.8
  - pandas
  - pytest
  - scikit-bio==0.5.6
  - prodigal
  - mmseqs2==13.45111
  - hmmer!=3.3.1
  - trnascan-se >=2
  - scipy<=1.8.0
  - sqlalchemy
  - barrnap
  - altair >=4
  - openpyxl
  - networkx
  - ruby
  - parallel
  - dram

[BioRRW]

Apologies for the wait. We have a new release coming, v1.5.0, to address some of the recent issues. In the meantime, the environment.yaml has been updated to resolve this issue.