No file named viral_genome_summary.tsv and Liquor.html Output by DRAM-v.py

[actledge]

Hi,

I try to use DRAM-v.py, but the output of DRAM-v.py distill only contains following files: amg_summary.tsv distill.log product.html vMAG_stats.tsv

The viral_genome_summary.tsv and Liquor.html mentioned in the document were not found. Is there anything wrong? BTW, the annotaions.tsv seems have annotated results, but it was not distilled?

My command:

DRAM-v.py annotate -i vs2/for-dramv/final-viral-combined-for-dramv.fa -v vs2/for-dramv/viral-affi-contigs-for-dramv.tab -o dramv_annotation --threads 40
DRAM-v.py distill -i dramv_annotation/annotations.tsv -o dramv_annotation/distilled_rerun

Screen output of DRAM-v.py distill: 2023-11-13 18:10:40,381 - The log file is created at dramv_annotation/distilled_rerun/distill.log 2023-11-13 18:10:40,653 - Retrieved database locations and descriptions 2023-11-13 18:10:40,711 - Note: the fallowing id fields were not in the annotations file and are not being used: ['kegg_genes_id', 'kegg_id', 'camper_id', 'fegenie_id', 'sulfur_id', 'methyl_id'], but these are ['ko_id', 'kegg_hit', 'peptidase_family', 'cazy_best_hit', 'pfam_hits'] 2023-11-13 18:10:40,711 - Determined potential amgs 2023-11-13 18:10:42,226 - Calculated viral genome statistics 2023-11-13 18:10:42,284 - No distillate information found for 0 genes. 2023-11-13 18:10:42,299 - Generated AMG summary /lustre/home/zengyuan/software/anaconda3/envs/DRAM/lib/python3.10/site-packages/altair/utils/core.py:317: FutureWarning: iteritems is deprecated and will be removed in a future version. Use .items instead. for col_name, dtype in df.dtypes.iteritems(): 2023-11-13 18:10:42,716 - Generated product heatmap 2023-11-13 18:10:42,716 - Completed distillation

Thanks!