Closed ChristopherBurgess-USDA closed 8 months ago
Quick update, I took a peak at DRAM-setup.py
and there is definately a syntax error there on line 122 (below). It looks like the camper argument help was pasted in the wrong spot.
set_db_locs_parser.add_argument('--viral_loc', default=None,
set_db_locs_parser.add_argument('--camper_tar_gz_loc', default=None,
help='The source for the CAMPER database files, this is a tar.gz file downloaded'
' from the release page https://github.com/WrightonLabCSU/CAMPER/releases')
help='mmseqs2 database file from ref seq viral gene collection')
Here is the fixed code:
set_db_locs_parser.add_argument('--viral_loc', default=None,
help='mmseqs2 database file from ref seq viral gene collection')
set_db_locs_parser.add_argument('--camper_tar_gz_loc', default=None,
help='The source for the CAMPER database files, this is a tar.gz file downloaded'
' from the release page https://github.com/WrightonLabCSU/CAMPER/releases')
This was fixed in commit 9ff00c9
I can't seem to get DRAM-setup.py to work after upgrading to the newest DRAM version.
I've tried completely uninstalling the environment and cleaning my conda cache with no luck. Is this a problem on my end or was there a bug in the release?