Thank you for providing this powerful tool! I am a beginner in DRAM. My DRAM version is 1.5.0. I used DRAM-v.py annotate to discover virus AMGs, and while the log file ends with "Annotations complete, processing annotations," I've also noticed additional log lines in https://github.com/WrightonLabCSU/DRAM/issues/229, such as "Annotations complete, assigning auxiliary scores and flags" and "Completed annotations." Could you clarify if this is a software version issue or if my run was unsuccessful?
My log file is as follows.
“2024-01-27 16:15:16,816 - Retrieved database locations and descriptions
2024-01-27 16:15:16,816 - Annotating final-viral-combined-for-dramv
2024-01-27 16:23:30,818 - Turning genes from prodigal to mmseqs2 db
2024-01-27 16:23:36,181 - Getting hits from kofam
2024-01-27 18:20:57,354 - No KEGG source provided so distillation will be of limited use.
2024-01-27 18:20:57,355 - Getting forward best hits from viral
2024-01-27 18:22:46,239 - Getting reverse best hits from viral
2024-01-27 18:23:04,241 - Getting descriptions of hits from viral
2024-01-27 18:23:06,047 - Getting forward best hits from peptidase
2024-01-27 18:24:35,216 - Getting reverse best hits from peptidase
2024-01-27 18:24:36,474 - Getting descriptions of hits from peptidase
2024-01-27 18:24:36,534 - Getting hits from pfam
2024-01-27 18:25:26,791 - Getting hits from dbCAN
2024-01-27 18:28:11,242 - Getting hits from VOGDB
2024-01-27 20:55:19,527 - Merging ORF annotations
2024-01-27 21:05:03,496 - No rRNAs were detected, no rrnas.tsv file will be created.
2024-01-27 21:18:43,608 - Annotations complete, processing annotations”
Thank you for providing this powerful tool! I am a beginner in DRAM. My DRAM version is 1.5.0. I used DRAM-v.py annotate to discover virus AMGs, and while the log file ends with "Annotations complete, processing annotations," I've also noticed additional log lines in https://github.com/WrightonLabCSU/DRAM/issues/229, such as "Annotations complete, assigning auxiliary scores and flags" and "Completed annotations." Could you clarify if this is a software version issue or if my run was unsuccessful? My log file is as follows. “2024-01-27 16:15:16,816 - Retrieved database locations and descriptions 2024-01-27 16:15:16,816 - Annotating final-viral-combined-for-dramv 2024-01-27 16:23:30,818 - Turning genes from prodigal to mmseqs2 db 2024-01-27 16:23:36,181 - Getting hits from kofam 2024-01-27 18:20:57,354 - No KEGG source provided so distillation will be of limited use. 2024-01-27 18:20:57,355 - Getting forward best hits from viral 2024-01-27 18:22:46,239 - Getting reverse best hits from viral 2024-01-27 18:23:04,241 - Getting descriptions of hits from viral 2024-01-27 18:23:06,047 - Getting forward best hits from peptidase 2024-01-27 18:24:35,216 - Getting reverse best hits from peptidase 2024-01-27 18:24:36,474 - Getting descriptions of hits from peptidase 2024-01-27 18:24:36,534 - Getting hits from pfam 2024-01-27 18:25:26,791 - Getting hits from dbCAN 2024-01-27 18:28:11,242 - Getting hits from VOGDB 2024-01-27 20:55:19,527 - Merging ORF annotations 2024-01-27 21:05:03,496 - No rRNAs were detected, no rrnas.tsv file will be created. 2024-01-27 21:18:43,608 - Annotations complete, processing annotations”