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WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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How long does populating step take? #345

Open jianshu93 opened 5 months ago

jianshu93 commented 5 months ago

Hello team,

For many of the database preparation steps, things are not clear:

2024-05-03 05:18:56,565 - Populating the description db, this may take some time

What is it may take some time? A day is some time, a week is also some time. I would be more useful when using numbers. By the way, why do you use python to do the database population step, sqlite is in C++, which could be much faster than a python API, especially when we have such large database.

Thanks,

Jianshu

sahilrishav2 commented 5 months ago

I agree, i have the same issues but in my case it got killed automatically

jianshu93 commented 5 months ago

It has been 30+ hours now, still no idea when it will finish. Another solution will be providing and pre-built database, which is much more convenient than building it from scratch. No idea why this option is not available.

Jianshu

BioRRW commented 4 months ago

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to stay tuned for the release of DRAM2, expected in 2025.

Best regards, DRAM dev team