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WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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`genome_stats.tsv` has the wrong tRNA count for MIMAG standards #348

Open AroneyS opened 1 month ago

AroneyS commented 1 month ago

Just noticed that the genome_stats.tsv is described to have "the required information for the MIMAG requirements". But as far as I can see, it includes a total count of all genes identified as tRNAs. Instead it should be a unique count of all tRNAs matching the 20 standard amino acids, quote: "tRNAs for at least 18 of the 20 possible amino acids" (see https://doi.org/10.1038/nbt.3893).

BioRRW commented 1 month ago

Thank you for choosing to use DRAM. Unfortunately, at this time, we do not have the capacity to provide support for DRAM. We appreciate your understanding and encourage you to stay tuned for the release of DRAM2, expected in 2025.

Best regards, DRAM dev team

AroneyS commented 1 month ago

Is this going to be fixed in DRAM2?

BioRRW commented 1 month ago

I will discuss with the development team. As of now, you should be able to determine this count from the output tRNA distillate tab. Thanks!