Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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distill: AttributeError: 'list' object has no attribute 'concat' #351
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marina-vn opened 1 week ago
Hi, I'm having a problem with the distill commands that I'm not sure how to solve:
DRAM-v.py distill -i D_dv1_10/annotations.tsv -o dramv-distill 0:00:05.668115: Retrieved database locations and descriptions 0:00:36.699746: Determined potential amgs Traceback (most recent call last): File "/home/emm4/anaconda3/envs/viral-id-sop/bin/DRAM-v.py", line 153, in
args.func(**args_dict)
File "/home/emm4/anaconda3/envs/viral-id-sop/lib/python3.8/site-packages/mag_annotator/summarize_vgfs.py", line 240, in summarize_vgfs
viral_genome_stats = make_viral_stats_table(annotations, potential_amgs, groupby_column)
File "/home/emm4/anaconda3/envs/viral-id-sop/lib/python3.8/site-packages/mag_annotator/summarize_vgfs.py", line 101, in make_viral_stats_table
viral_stats_series.concat(virus_data.concat(gene_counts_series))
AttributeError: 'list' object has no attribute 'concat'