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WrightonLabCSU / DRAM

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
GNU General Public License v3.0
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VOGDB does not import correctly #353

Closed nactopus closed 1 week ago

nactopus commented 1 week ago

Hi there,

When using DRAM-setup.py (which by the way gave me a syntax error around line 124 that I could poorly fix) to prepare the databases, I get a vog_latest_hmms.txt file that is empty. I managed to download the hmm files from VOGDB.org, concatenate the hmms into a new vog_latest_hmms.txt file, and run hmmpress on them.

However, when I rerun DRAM-setup.py again, it needs an empty directory, and I don't know how to direct it to the vog_latest_hmms.txt file that I made. Thus, I've been unable to properly install the databases.

Is there a workaround this? Thank you!

nactopus commented 1 week ago

This was discussed in issue #349, my bad.