Open deminatanja opened 2 weeks ago
I have the same problem. I tried to modify line 189-192 of the script “annotate_vgfs.py”.
As follows: virsorter_genes_copy = virsorter_genes.copy() virsorter_genes_copy['start_position'] = virsorter_genes_copy['start_position'].astype(int) virsorter_genes_copy['end_position'] = virsorter_genes_copy['end_position'].astype(int) virsorter_genes = virsorter_genes_copy.sort_values('start_position') virsorter_gene_number = 0
There was no error reported.
Hi,
Not sure if this issue was already asked about, please direct me to that thread if so. I was trying to run Dram-v on Virsorter2 output, but got an error, the command used and the end of my log are below:
Could you please help to troubleshoot?
Best, Tatiana