MAGeCK count aligner - Githubissues

WubingZhang / MAGeCKFlute

Integrative analysis pipeline for pooled CRISPR functional genetic screens

https://github.com/WubingZhang/MAGeCKFlute

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MAGeCK count aligner #14

Open wangjiawen2013 opened 2 years ago

wangjiawen2013 commented 2 years ago

Hi, which aligner does Mageck count uses to count the gRNAs ? or a new mapping algorithm or strategy was developed for Mageck? Does it allow mismatches and indels ?