Wytamma
commented
1 year ago Hey @bioinfo-fiend!
Not sure why it’s not working… I think it’s a setting that’s changed in singularity (will test later)
Here’s the link to the image https://cloud.sylabs.io/library/wytamma/default/rstudio_hpc
I think you can download the image directly from there. However, it uses an old version of R. I’d suggest rebuilding it yourself to get a newer version.
Otherwise if you just want to use RStudio and not the extra qsub commands I’ve added then you cloud just use the latest rocker image. I’ve written about this here -> https://blog.wytamma.com/remote-computing-bioinfo-clinic/#rstudio-server
I hope that helps!
Hello!
This might be a long shot, not sure if this repo is still maintained, was trying to implement but get an error when running the singularity pull command
singularity pull library://wytamma/default/rstudio_hpc:latestError:
FATAL: Unable to get library client configuration: remote has no library client (see https://apptainer.org/docs/user/latest/endpoint.html#no-default-remote)The error message provided indicates that there was an issue retrieving the library client configuration because the remote library I am trying to access does not have a library client defined.