Wytamma / snk

Snakemake workflow management system and CLI generation tool
https://snk.wytamma.com
MIT License
31 stars 2 forks source link

differentiate between 'profile' and 'workflow-profile' #81

Open cmeesters opened 1 week ago

cmeesters commented 1 week ago

Hi,

<workflow-name> run --help lists the --profile, but not the --workflow-profile option. That would be neat to have. Also, snakemake provides an env variable $SNAKEMAKE_PROFILE. If this is set, snk could indicate that a global profile already exists in its options listing.