CNAM-273-pureconfig-pioglitazone-main

[danielpes]

This PR starts the refactoring towards a new config strategy (using PureConfig), including:

• New config files for the Pioglitazone study (under src/main/resources/pioglitazone)
• New base Config traits: etl.config.StudyConfig and etl.config.ConfigLoader
• New PioglitazoneConfig case class and companion loader, with tests
• Updates to PioglitazoneMain and related classes (e.g. Sources)

[codecov[bot]]

Codecov Report

Merging #127 into master will increase coverage by 7.15%. The diff coverage is 54.76%.

@@            Coverage Diff             @@
##           master     #127      +/-   ##
==========================================
+ Coverage   86.13%   93.29%   +7.15%     
==========================================
  Files         110      105       -5     
  Lines        1716     1401     -315     
  Branches       56       50       -6     
==========================================
- Hits         1478     1307     -171     
+ Misses        238       94     -144

Impacted Files	Coverage Δ
...olytechnique/cmap/cnam/etl/implicits/package.scala	0% <ø> (ø)	:arrow_up:
...ue/cmap/cnam/util/datetime/implicits/package.scala	60% <0%> (-40%)	:arrow_down:
...fr/polytechnique/cmap/cnam/study/StudyConfig.scala	0% <0%> (ø)	:arrow_up:
...ytechnique/cmap/cnam/etl/config/ConfigLoader.scala	100% <100%> (ø)
...p/cnam/study/pioglitazone/PioglitazoneConfig.scala	100% <100%> (ø)	:arrow_up:
.../polytechnique/cmap/cnam/etl/sources/Sources.scala	61.53% <18.18%> (-8.03%)	:arrow_down:
...ap/cnam/etl/extractors/acts/McoCEMedicalActs.scala	73.33% <0%> (-26.67%)	:arrow_down:
...map/cnam/etl/transformers/follow_up/FollowUp.scala	0% <0%> (-25%)	:arrow_down:
... and 16 more

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