X-DataInitiative / SCALPEL-Extraction

SCALPEL extraction library to fetch concepts from flattened SNDS
BSD 3-Clause "New" or "Revised" License
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Cnam 356 exposure drug conditionning #164

Closed firas16 closed 6 years ago

firas16 commented 6 years ago

This task consists on integrating drug conditioning into exposure calculus. It's divided into 4 commits:

I needed to update the code of the first commit in the 3rd one. But it may be useful to see commit by commit just to understand the idea.

codecov[bot] commented 6 years ago

Codecov Report

Merging #164 into master will decrease coverage by 0.88%. The diff coverage is 88.23%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #164      +/-   ##
==========================================
- Coverage   94.23%   93.35%   -0.89%     
==========================================
  Files         133      133              
  Lines        1545     1566      +21     
  Branches       54       29      -25     
==========================================
+ Hits         1456     1462       +6     
- Misses         89      104      +15
Impacted Files Coverage Δ
...cnam/study/rosiglitazone/RosiglitazoneConfig.scala 100% <ø> (ø) :arrow_up:
...nique/cmap/cnam/study/fall/config/FallConfig.scala 100% <ø> (ø) :arrow_up:
...etl/extractors/drugs/DrugClassificationLevel.scala 100% <ø> (ø) :arrow_up:
...rmers/exposures/UnlimitedExposurePeriodAdder.scala 100% <ø> (ø) :arrow_up:
...formers/exposures/ExposuresTransformerConfig.scala 0% <ø> (ø) :arrow_up:
...p/cnam/study/pioglitazone/PioglitazoneConfig.scala 100% <ø> (ø) :arrow_up:
...l/transformers/exposures/ExposurePeriodAdder.scala 100% <ø> (ø) :arrow_up:
...cnam/study/fall/exposures/FallStudyExposures.scala 0% <0%> (ø) :arrow_up:
...cmap/cnam/etl/extractors/drugs/MoleculeLevel.scala 100% <100%> (ø) :arrow_up:
...formers/exposures/LimitedExposurePeriodAdder.scala 100% <100%> (ø) :arrow_up:
... and 7 more

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