Cnam-376 empty code list

[ysebiat]

This PR has the main objective of rewriting the Extractor logic. It allows to make a trait that defines what an Extractor is according to the Pipeline Paper. It also allows a default behaviour; when every Event that can be extracted is extracted: a Bulk Main.

So this PR is:

1. Create a new trait Extractor.
2. Add a new behaviour where all Events are extracted from the input sources.
3. Add a BulkMain to extract all the Events.
4. Add a new level of Drug Purchases namely, CIP13 level.

[codecov[bot]]

Codecov Report

Merging #185 into master will decrease coverage by 0.21%. The diff coverage is 91.41%.

@@            Coverage Diff            @@
##           master    #185      +/-   ##
=========================================
- Coverage   93.62%   93.4%   -0.22%     
=========================================
  Files         148     152       +4     
  Lines        1678    1669       -9     
  Branches       26      26              
=========================================
- Hits         1571    1559      -12     
- Misses        107     110       +3

Impacted Files	Coverage Δ
...gs/classification/families/Antihypertenseurs.scala	100% <ø> (ø)
...cnam/study/rosiglitazone/RosiglitazoneConfig.scala	100% <ø> (ø)	:arrow_up:
...rs/drugs/classification/families/Hypnotiques.scala	100% <ø> (ø)
...nam/etl/extractors/diagnoses/DiagnosesConfig.scala	100% <ø> (ø)	:arrow_up:
...ue/cmap/cnam/etl/extractors/drugs/DrugConfig.scala	100% <ø> (ø)	:arrow_up:
...cmap/cnam/study/fall/config/FallConfigLoader.scala	100% <ø> (ø)	:arrow_up:
...p/cnam/study/fall/config/FallDrugClassConfig.scala	100% <ø> (ø)	:arrow_up:
...ytechnique/cmap/cnam/etl/config/ConfigLoader.scala	100% <ø> (ø)	:arrow_up:
...nam/study/rosiglitazone/extractors/Diagnoses.scala	0% <0%> (ø)
...cnam/study/pioglitazone/extractors/Diagnoses.scala	0% <0%> (ø)
... and 61 more

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[ysebiat]

This ready now. This is the check list that I will have to go through

• [x] Pioglitazone study.
• [x] Rosiglitazone study.
• [x] Fall study.

[ysebiat]

I see your point. I will probably add it then. The DCIREvent Extractor.

[ysebiat]

@dsun0720 I have added the DCIREventsExtractor and made sure that it is running for Fall study. Can you have another look please?

[dsun0720]

code approved, rebase the code before merge.

Good job