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X-DataInitiative / SCALPEL-Extraction

SCALPEL extraction library to fetch concepts from flattened SNDS
BSD 3-Clause "New" or "Revised" License
17 stars 3 forks source link

CNAM-419: Prescription transformer. #216

Closed ysebiat closed 4 years ago

ysebiat commented 4 years ago

This corrects the previous PR from a git perspective.

Add a groupID that relates different DCIR lines into the same prescription.

codecov[bot] commented 4 years ago

Codecov Report

Merging #216 into develop will increase coverage by 0.05%. The diff coverage is 100%.

Impacted file tree graph

@@             Coverage Diff             @@
##           develop     #216      +/-   ##
===========================================
+ Coverage    92.81%   92.86%   +0.05%     
===========================================
  Files          192      192              
  Lines         2281     2299      +18     
  Branches        39       31       -8     
===========================================
+ Hits          2117     2135      +18     
  Misses         164      164
Impacted Files Coverage Δ
.../cmap/cnam/etl/extractors/dcir/DcirExtractor.scala 100% <100%> (ø) :arrow_up:
...que/cmap/cnam/etl/extractors/dcir/DcirSource.scala 95.45% <100%> (+2.12%) :arrow_up:
...cmap/cnam/etl/extractors/drugs/DrugExtractor.scala 100% <100%> (ø) :arrow_up:
.../cnam/study/rosiglitazone/outcomes/Infarctus.scala 0% <0%> (-100%) :arrow_down:
...udy/rosiglitazone/outcomes/OutcomeDefinition.scala 85.71% <0%> (+35.71%) :arrow_up:

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