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X-lab-3D / PANDORA

MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline
Apache License 2.0
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netMHCpan_install.py can not download 'data' file for netMHCIIpan #111

Closed FarzanehParizi closed 2 years ago

FarzanehParizi commented 2 years ago

Expected Behavior:

Download the working data folder for netMHCIIpan. Find the correct path for downloading this data.

Current Behavior:

gzip: data.tar.gz: No such file or directory tar: data.tar: Cannot open: No such file or directory tar: Error is not recoverable: exiting now rm: cannot remove 'data.tar': No such file or directory (base) @octarine:~/PANDORA$ wget https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.1/data.tar.gz --2022-02-02 12:12:19-- https://services.healthtech.dtu.dk/services/NetMHCIIpan-4.1/data.tar.gz Resolving services.healthtech.dtu.dk (services.healthtech.dtu.dk)... 192.38.87.75 Connecting to services.healthtech.dtu.dk (services.healthtech.dtu.dk)|192.38.87.75|:443... connected. HTTP request sent, awaiting response... 404 Not Found 2022-02-02 12:12:19 ERROR 404: Not Found.

Detailed Description:

In https://services.healthtech.dtu.dk/service.php?NetMHCIIpan-4.1 there is no data.tar.gz file to be downloaded

cbaakman commented 2 years ago

I think the README should also say that one would have to download some netMHCpan and netMHCIIpan files manually. The install script seems outdated and needs to be replaced.

DarioMarzella commented 2 years ago

NetMHCpan now needs to be installed by the user manually. PANDORA will not take care of its installation anymore.