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XSLiuLab / Seq2Neo

Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
Academic Free License v3.0
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IndexError: list index out of range #11

Open toprakdog opened 11 months ago

toprakdog commented 11 months ago

Hi First thank you very much for creating this great pipeline and sharing it with us. My question might be too basic, I might not explain it properly. sorry about it. I am getting an index error for 2 samples out of 60. the error message is like this;

File "/home/seq2neo/miniconda3/envs/Seq2Neo/bin/seq2neo", line 33, in sys.exit(load_entry_point('Seq2Neo==2.1', 'console_scripts', 'seq2neo')()) File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/main.py", line 13, in main args[0].func.main(args[1]) File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/model/whole.py", line 120, in main Integration(inputdir=filepath, outdir=filepath) # 整合转换 File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/lib/toTable.py", line 158, in Integration HLA = file.split('')[6].split('.')[0] IndexError: list index out of range

Also, to explain it better, the pipeline successfully do all analyses it supposed to do, but it could not create these result files;

all.csv cnn_results.csv combination_mhci_tap.csv mhci.csv tap.csv

Once again, Thank you very much for your time. Best regards