NichKu
commented
2 years ago solved it. Maybe I've missed it but if not, you might consider adding a note about the environment_20210406.yml file where blast is listed.
Closed NichKu closed 2 years ago
NichKu
commented
2 years ago solved it. Maybe I've missed it but if not, you might consider adding a note about the environment_20210406.yml file where blast is listed.
Honchkrow
commented
2 years ago Hi @NichKu , Sorry for late response. I will test the error and update a new version environment file.
best, Honchkrow
Hello
Great tools, thanks a lot!
I encountered an issue with the centrifuge-download command in virusGenomeCheck with the flag -m.
The error is:
Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assemblysummary.txt ... : line 28: dustmasker: command not found : line 28: dustmasker: command not found Progress : [----------------------------------------] 0% 2/11357: line 28: dustmasker: command not found.
...
Progress : [#######################################-] 99% 11356/11357_: line 28: dustmasker: command not found Progress : [########################################] 100% 11357/11357
Exits after attempting to download all viral genomes but the files have a size of 0kb.
Best, Nich