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XZhang97666 / MultimodalMIMIC

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The ‘text_data‘ attribute of some entries is missing #3

Open flying-lby opened 1 year ago

flying-lby commented 1 year ago

Hello, I'm sorry to disturb you. May I ask how you addressed the issue of missing clinical note data? I've encountered a situation where some entries have missing ‘text_data’ attributes during the process of reproducing the results of a research paper.****

njtp111 commented 1 year ago

I have the same problem.

IcurasLW commented 1 year ago

I encountered the same issue, But I guess the author assumed the full modality is accessible as they didnt discuss the missing modalities problem in their paper.

The episode indicate the number of times a patient admit to ICU. Some patients may enter ICU multiple times but the notes will be taken by the first time, which is episode 1.

Flyfei19 commented 11 months ago

I have the same problem.Have you resolved it? How did you solve it?

IcurasLW commented 11 months ago

I have the same problem.Have you resolved it? How did you solve it?

If you remove the patients with no text notes. It works fine. (Why? see my comments above)

Alert: The model takes a long time to run.

XZhang97666 commented 11 months ago

Thanks for your question! We following https://github.com/kaggarwal/ClinicalNotesICU to conduct text preprocessing and we only keep the patient records with both modalities.