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Xiangyang1984 / Gcluster

A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes
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Can't locate Bio/SeqIO.pm in @INC #6

Open luisafmc opened 2 years ago

luisafmc commented 2 years ago

Dear Sir/Madam,

I am really interested in using this pipeline, however I found an error every time that I try to run the interested_gene_generation.pl command.

It says everytime the following error: perl: warning: Falling back to the standard locale ("C"). Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /path/for/anaconda3/envs/Gcluster/lib/perl5/site_perl/5.22.0 /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/5.32/site_perl /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/site_perl /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/5.32/vendor_perl /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/vendor_perl /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/5.32/core_perl /lustre7/home/luisafmc/.conda/envs/Gcluster/lib/perl5/core_perl .) at interested_gene_generation.pl line 6. BEGIN failed--compilation aborted at interested_gene_generation.pl line 6.

As I understand it is a problem trying to find the Bio::SeqIO library in the @INC, but I am not really sure.

Thank you for developt this very cool program

Xiangyang1984 commented 2 years ago

Thanks for your using Gcluster. you can try to deactivate conda by this command: "conda deactivate", or you can try to install Bio::SeqIO using the following command: "sudo cpan -i Bio::SeqIO"