I was trying to install mmpycocotools, where my cython version was 3.0.7. I got this error:
(base) root@dfc48a1e70aa:/raid/home_yedek/utku/MonoCon/mmdetection3d-0.14.0# pip install mmpycocotools
Collecting mmpycocotools
Using cached mmpycocotools-12.0.3.tar.gz (23 kB)
Requirement already satisfied: setuptools>=18.0 in /opt/conda/lib/python3.7/site-packages (from mmpycocotools) (46.4.0.post20200518)
Requirement already satisfied: cython>=0.27.3 in /opt/conda/lib/python3.7/site-packages (from mmpycocotools) (3.0.7)
Requirement already satisfied: matplotlib>=2.1.0 in /opt/conda/lib/python3.7/site-packages (from mmpycocotools) (3.5.3)
Requirement already satisfied: kiwisolver>=1.0.1 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (1.4.5)
Requirement already satisfied: cycler>=0.10 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (0.11.0)
Requirement already satisfied: python-dateutil>=2.7 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (2.8.2)
Requirement already satisfied: packaging>=20.0 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (23.2)
Requirement already satisfied: pillow>=6.2.0 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (7.1.2)
Requirement already satisfied: numpy>=1.17 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (1.18.1)
Requirement already satisfied: fonttools>=4.22.0 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (4.38.0)
Requirement already satisfied: pyparsing>=2.2.1 in /opt/conda/lib/python3.7/site-packages (from matplotlib>=2.1.0->mmpycocotools) (3.1.1)
Requirement already satisfied: typing-extensions; python_version < "3.8" in /opt/conda/lib/python3.7/site-packages (from kiwisolver>=1.0.1->matplotlib>=2.1.0->mmpycocotools) (4.7.1)
Requirement already satisfied: six>=1.5 in /opt/conda/lib/python3.7/site-packages (from python-dateutil>=2.7->matplotlib>=2.1.0->mmpycocotools) (1.14.0)
Building wheels for collected packages: mmpycocotools
Building wheel for mmpycocotools (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /opt/conda/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"'; __file__='"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-gfprdl92
cwd: /tmp/pip-install-h5eil3tu/mmpycocotools/
Complete output (76 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/__init__.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/coco.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/mask.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/cocoeval.py -> build/lib.linux-x86_64-3.7/pycocotools
running build_ext
Compiling pycocotools/_mask.pyx because it changed.
[1/1] Cythonizing pycocotools/_mask.pyx
/opt/conda/lib/python3.7/site-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-install-h5eil3tu/mmpycocotools/pycocotools/_mask.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
building 'pycocotools._mask' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pycocotools
creating build/temp.linux-x86_64-3.7/common
creating build/common
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c pycocotools/_mask.c -o build/temp.linux-x86_64-3.7/pycocotools/_mask.o
In file included from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from pycocotools/_mask.c:1219:
/opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c common/maskApi.c -o build/temp.linux-x86_64-3.7/common/maskApi.o
common/maskApi.c: In function ‘rleDecode’:
common/maskApi.c:46:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for( k=0; k<R[i].cnts[j]; k++ ) *(M++)=v; v=!v; }}
^~~
common/maskApi.c:46:49: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for( k=0; k<R[i].cnts[j]; k++ ) *(M++)=v; v=!v; }}
^
common/maskApi.c: In function ‘rleFrPoly’:
common/maskApi.c:166:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for(j=0; j<k; j++) x[j]=(int)(scale*xy[j*2+0]+.5); x[k]=x[0];
^~~
common/maskApi.c:166:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for(j=0; j<k; j++) x[j]=(int)(scale*xy[j*2+0]+.5); x[k]=x[0];
^
common/maskApi.c:167:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for(j=0; j<k; j++) y[j]=(int)(scale*xy[j*2+1]+.5); y[k]=y[0];
^~~
common/maskApi.c:167:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for(j=0; j<k; j++) y[j]=(int)(scale*xy[j*2+1]+.5); y[k]=y[0];
^
common/maskApi.c: In function ‘rleToString’:
common/maskApi.c:212:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
if(more) c |= 0x20; c+=48; s[p++]=c;
^~
common/maskApi.c:212:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
if(more) c |= 0x20; c+=48; s[p++]=c;
^
common/maskApi.c: In function ‘rleFrString’:
common/maskApi.c:220:3: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation]
while( s[m] ) m++; cnts=malloc(sizeof(uint)*m); m=0;
^~~~~
common/maskApi.c:220:22: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’
while( s[m] ) m++; cnts=malloc(sizeof(uint)*m); m=0;
^~~~
common/maskApi.c:228:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
if(m>2) x+=(long) cnts[m-2]; cnts[m++]=(uint) x;
^~
common/maskApi.c:228:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
if(m>2) x+=(long) cnts[m-2]; cnts[m++]=(uint) x;
^~~~
common/maskApi.c: In function ‘rleToBbox’:
common/maskApi.c:141:31: warning: ‘xp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
if(j%2==0) xp=x; else if(xp<x) { ys=0; ye=h-1; }
^
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c ../common/maskApi.c -o build/temp.linux-x86_64-3.7/../common/maskApi.o
gcc: error: ../common/maskApi.c: No such file or directory
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for mmpycocotools
Running setup.py clean for mmpycocotools
Failed to build mmpycocotools
Installing collected packages: mmpycocotools
Running setup.py install for mmpycocotools ... error
ERROR: Command errored out with exit status 1:
command: /opt/conda/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"'; __file__='"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-vq8q1ge5/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/include/python3.7m/mmpycocotools
cwd: /tmp/pip-install-h5eil3tu/mmpycocotools/
Complete output (70 lines):
running install
running build
running build_py
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/__init__.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/coco.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/mask.py -> build/lib.linux-x86_64-3.7/pycocotools
copying pycocotools/cocoeval.py -> build/lib.linux-x86_64-3.7/pycocotools
running build_ext
building 'pycocotools._mask' extension
creating build/temp.linux-x86_64-3.7
creating build/temp.linux-x86_64-3.7/pycocotools
creating build/temp.linux-x86_64-3.7/common
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c pycocotools/_mask.c -o build/temp.linux-x86_64-3.7/pycocotools/_mask.o
In file included from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832:0,
from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from pycocotools/_mask.c:1219:
/opt/conda/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it with " \
^~~~~~~
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c common/maskApi.c -o build/temp.linux-x86_64-3.7/common/maskApi.o
common/maskApi.c: In function ‘rleDecode’:
common/maskApi.c:46:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for( k=0; k<R[i].cnts[j]; k++ ) *(M++)=v; v=!v; }}
^~~
common/maskApi.c:46:49: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for( k=0; k<R[i].cnts[j]; k++ ) *(M++)=v; v=!v; }}
^
common/maskApi.c: In function ‘rleFrPoly’:
common/maskApi.c:166:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for(j=0; j<k; j++) x[j]=(int)(scale*xy[j*2+0]+.5); x[k]=x[0];
^~~
common/maskApi.c:166:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for(j=0; j<k; j++) x[j]=(int)(scale*xy[j*2+0]+.5); x[k]=x[0];
^
common/maskApi.c:167:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
for(j=0; j<k; j++) y[j]=(int)(scale*xy[j*2+1]+.5); y[k]=y[0];
^~~
common/maskApi.c:167:54: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
for(j=0; j<k; j++) y[j]=(int)(scale*xy[j*2+1]+.5); y[k]=y[0];
^
common/maskApi.c: In function ‘rleToString’:
common/maskApi.c:212:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
if(more) c |= 0x20; c+=48; s[p++]=c;
^~
common/maskApi.c:212:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
if(more) c |= 0x20; c+=48; s[p++]=c;
^
common/maskApi.c: In function ‘rleFrString’:
common/maskApi.c:220:3: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation]
while( s[m] ) m++; cnts=malloc(sizeof(uint)*m); m=0;
^~~~~
common/maskApi.c:220:22: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’
while( s[m] ) m++; cnts=malloc(sizeof(uint)*m); m=0;
^~~~
common/maskApi.c:228:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
if(m>2) x+=(long) cnts[m-2]; cnts[m++]=(uint) x;
^~
common/maskApi.c:228:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
if(m>2) x+=(long) cnts[m-2]; cnts[m++]=(uint) x;
^~~~
common/maskApi.c: In function ‘rleToBbox’:
common/maskApi.c:141:31: warning: ‘xp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
if(j%2==0) xp=x; else if(xp<x) { ys=0; ye=h-1; }
^
gcc -pthread -B /opt/conda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/lib/python3.7/site-packages/numpy/core/include -Icommon -I/opt/conda/include/python3.7m -c ../common/maskApi.c -o build/temp.linux-x86_64-3.7/../common/maskApi.o
gcc: error: ../common/maskApi.c: No such file or directory
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /opt/conda/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"'; __file__='"'"'/tmp/pip-install-h5eil3tu/mmpycocotools/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-vq8q1ge5/install-record.txt --single-version-externally-managed --compile --install-headers /opt/conda/include/python3.7m/mmpycocotools Check the logs for full command output.`
Problem:
I was trying to install mmpycocotools, where my cython version was 3.0.7. I got this error:
Solution:
Downgrading cython to 0.29.37 solved this issue.