issues
search
XiaoTaoWang
/
EagleC
A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
Other
51
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
predictSV : error No such file or directory /hg38.gap-mask.10k.pkl
#45
AGunnell77
opened
1 week ago
0
How to give reference genome version when running gene fusion
#44
Krithika-Bhuvan
opened
1 month ago
0
‘Failed to find sqlite3 column type for category’ while annotate-gene-fusion
#43
Wong718
opened
1 month ago
2
Can you provide more information about the header of the output file ?
#42
Krithika-Bhuvan
closed
1 month ago
2
How to run PredictSV on .hic file output from Juicer
#41
Krithika-Bhuvan
closed
1 month ago
1
pretrained models with low resolution
#40
asaki1986
opened
1 month ago
4
Help Interpreting Results for Structural Variations
#39
qolba
opened
1 month ago
1
Submitting jobs using bash array
#38
re2srm
opened
2 months ago
0
how to generate file for '--cnv-file' in plot-intraSVs fuction?
#37
7insong
opened
4 months ago
1
On the problem of standard sets
#36
TomWang666
opened
6 months ago
0
TypeError: sequence item 18: expected str instance, NoneType found
#35
zengxiaofei
closed
5 months ago
0
Hi-C 3.0 with DdeI+DpnII
#34
gibcus
opened
8 months ago
5
Failed to run "download-pretrained-models"
#33
bismarck1008
closed
10 months ago
1
"TypeError: sequence item 18: expected str instance, NoneType found", continue with merge-redundant-SVs?
#32
tolender
closed
1 year ago
2
No module named 'eaglec.scoreUtils'
#31
jiadong324
opened
1 year ago
7
[Issue] Error when constructing DIA matrix and running predictSV script
#30
Jasonfengjx
opened
1 year ago
0
Inquiry for KeyError:'sweight'
#29
Sanghyun-WaxingMoon
opened
1 year ago
2
UnboundLocalError: local variable 'cnn_models' referenced before assignment
#28
wangY1min
closed
1 year ago
0
Application to dm6
#27
MarcoDiS
opened
1 year ago
1
Optimization loop failed
#26
DittmanC
opened
1 year ago
1
specify gpu number to use
#25
Xieeeee
opened
1 year ago
1
FileNotFoundError: [Errno 2] No such file or directory: 'Sample.CNN_SVs.10K.txt'
#24
abhijitcbio
closed
1 year ago
2
Non human genomes
#23
luciaalvarez95
closed
1 year ago
4
EagleC detecting too few SVs
#22
nyuhic
closed
1 year ago
2
EagleC HiChIP with Neoloopfinder
#21
nyuhic
closed
1 year ago
4
Capture HiC data
#20
yfarjoun
opened
1 year ago
3
error - eaglec.scoreUtils Not found
#19
abhijitcbio
opened
1 year ago
9
unable to run the example on linux server (redhat)
#18
clolalan7
opened
1 year ago
2
How much resources are needed
#17
nyuhic
closed
1 year ago
2
Changing the --cnv-max-value parameter for plot-intraSVs does not work
#16
kuba11
closed
1 year ago
2
predictSV-ERROR: sequence item 2: expected str instance, NoneType found
#15
X201231
closed
1 year ago
2
How to identify the SV between two genomes from two species
#14
aaannaw
opened
1 year ago
1
inquiries on output files
#13
distilledchild
opened
1 year ago
2
OSError file signature not found
#12
ValentinaBoP
opened
2 years ago
2
predictSV have some error
#11
yangfeizZZ
closed
2 years ago
2
_expected.pkl is not found
#10
Bo-UT
closed
2 years ago
4
No module named 'eaglec.scoreUtils'
#9
guandailu
opened
2 years ago
3
Failed to download pre-trained models
#8
shenlinyong
closed
2 years ago
7
output of EagleC as input of Neoloopfinder
#7
Bo-UT
opened
2 years ago
2
Same results with ICE and CNV normalized data
#6
Bo-UT
opened
2 years ago
2
an error with 'weight'
#5
distilledchild
opened
2 years ago
4
Select SV type before running
#4
baozg
opened
2 years ago
1
Key Error: 'sweight' in the predictSV
#3
baozg
closed
2 years ago
3
Download manually for HPC
#2
baozg
closed
2 years ago
4
OSError: Unable to open file and subprocess.CalledProcessError:
#1
Bo-UT
opened
2 years ago
13