XiaoTaoWang / HiC_pipeline

An easy-to-use Hi-C data processing software supporting distributed computation.
http://xiaotaowang.github.io/HiC_pipeline/index.html
GNU General Public License v3.0
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Running filtering without .pstats file #15

Open MartinLoza opened 10 months ago

MartinLoza commented 10 months ago

Hi, thank you for coding and maintaining such a useful tool! I have a couple of "pairs" data from a collaborator. As we don't know if the pairs were already quality-checked, I would like to use the filtering function before binning. However, it looks like the function requires a ".pstats" file. This file is usually obtained if you perform the complete pre-processing, but in this case, we don't have it. I was wondering if there is a way to generate this file from my .pairs file or create a dummy one (empty file didn't work).

Again, thank you for this great tool, and for taking your time to maintain it!