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XiaoTaoWang / HiC_pipeline

An easy-to-use Hi-C data processing software supporting distributed computation.
http://xiaotaowang.github.io/HiC_pipeline/index.html
GNU General Public License v3.0
55 stars 20 forks source link

Replace pp with mp #3

Closed YunXiaLiu closed 7 years ago

YunXiaLiu commented 7 years ago

I modified your version in 3 ways:

  1. Replace pp with python's multiprocessing during the chunk generating stage, to solve the problem of blocking.

  2. Provide a lightweight version of hiclib.

  3. Make runHiC compatible with the latest numpy.

XiaoTaoWang commented 7 years ago

Thank you for your contributions. I'll check it.