search

XiaoTaoWang / NeoLoopFinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
Other
57 stars 16 forks source link

Generating the genome wide loops #20

Open wt2855918 opened 3 years ago

wt2855918 commented 3 years ago

Hi All, thanks for providing this great software. I am also interested in calling the genomewide loops from the sample where the peakachu was applied. May I please ask for the paramaters in peakachu that you used to first generate the loops? Otherwise, It will be very hard for me to go to details of your code to find the parameters. Mine data is K27Ac HiChIP data.

Thanks!!!