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XiaoTaoWang / NeoLoopFinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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compatibility with hiChIP data #28

Open SplitInf opened 2 years ago

SplitInf commented 2 years ago

Hi this is more of a question than an issue. I was wondering if NeoLoopFinder can be applied to H3K27ac HiChIP, given the enhancer hijack use case as illustrated in the nature paper? Thanks!

XiaoTaoWang commented 2 years ago

Hi, current NeoLoopFinder version cannot be directly applied to pulldown-based experiments. However, this extension is exactly what I want to add in next version :)

SplitInf commented 2 years ago

Fantastic, that will be very useful for the community! Looking forward to use it.