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XiaoTaoWang / NeoLoopFinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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neoloop-caller failed #36

Open yangfeizZZ opened 2 years ago

yangfeizZZ commented 2 years ago

when i run neoloop-caller: neoloop-caller -O M1.neo-loop.txt -H M2_5000.cool --assembly M2.assemblies.txt --no-clustering --prob 0.95 the error: --2022-09-09 23:00:38-- https://dl.dropboxusercontent.com/s/5nnxf9drw39acu5/high-confidence.50million.5kb.pkl?dl=0 正在解析主机 dl.dropboxusercontent.com (dl.dropboxusercontent.com)... 66.220.147.11, 2001::766b:b4d8 正在连接 dl.dropboxusercontent.com (dl.dropboxusercontent.com)|66.220.147.11|:443... 失败：连接超时。 正在连接 dl.dropboxusercontent.com (dl.dropboxusercontent.com)|2001::766b:b4d8|:443... 失败：网络不可达。 Would you mind helping me solve this problem?

XiaoTaoWang commented 2 years ago

Hi, the models needed for loop prediction are currently hosted in dropbox. However, it seems that the mainland China has trouble in accessing dropbox ... I am upgrading this package right now. I will transfer these models to another server during this process and let you know when it is finished.

yangfeizZZ commented 2 years ago

Hi, the models needed for loop prediction are currently hosted in dropbox. However, it seems that the mainland China has trouble in accessing dropbox ... I am upgrading this package right now. I will transfer these models to another server during this process and let you know when it is finished.

Thank you and i am also a HZAU post-graduate student.Happy Mid-Autumn Festival.I hope you will upgrade this as soon as possible.

XiaoTaoWang commented 2 years ago

Hi there, I just released a new version (https://github.com/XiaoTaoWang/NeoLoopFinder#release-notes). All the reference data and models were moved to a new server. Can you upgrade your NeoLoopFinder and try again? Note that the dependent packages need to be re-installed as well. Thanks!