XiaoTaoWang / NeoLoopFinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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Pickle has an incompatible dtype #66

Closed AudreyBaguette closed 1 month ago

AudreyBaguette commented 1 month ago

I am trying to run neoloopfinder on sparse matrices of cancer with few rearrangements. All steps seem to be working fine, until I reach the last step. The neoloop-caller function produces the following error: ValueError: node array from the pickle has an incompatible dtype:

I tried using different resolutions, using only one of multiple at the same time, but the error is always the same. Any idea how to fix this? Neoloop version: 0.4.3.post2

AudreyBaguette commented 1 month ago

Fixed! I was using the wrong versions of joblib and scikit-learn.