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Xiaoyu2425 / mEQO

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CAN_plot(can) #1

Open marcomeola opened 1 year ago

marcomeola commented 1 year ago

Following the example suggested in ??mEQO::Microbiome, the CAN_plot() function seems not to be available in the mEQO package. In fact there is no such function in the package. But I could not find the function in other packages (CAN package?) within dependencies.

Xiaoyu2425 commented 1 year ago

Hi, I'm so sorry that I thought I have replied to this message some time but actually didn't!! To visualize a network, the users could use the output (i.e., nodes and edges) from CAN() and plot them with Cytoscape, Gephi or R package visNetwork. We have decided to remove CAN_plot() function in our package as those softwares/packages are already well-developed for network visualization purposes. For visNetwork we provided an example in the Readme file. Sorry about the confusion!