lxie21
commented
2 years ago Here is the explanation from the developer:
"I get the sequence from Uniprot and find that there are “P” “N” “T”.
We find conserved position first then slid on the distilled sequence to get triplets."
On Fri, Dec 17, 2021 at 11:15 AM wawpaopao @.***> wrote:
I am still a bit confused about this file.Take the first senqunece 'A0A016RYG7' in the 'gpcr_uniprot2triplets.json' as an example,there are 210 conserved positions. I don't understand how to get the distilled triplets of 'A0A016RYG7' like 'pnt ntp tpl pls' at the start because it seems no relation between the sequence of 'A0A016RYG7' in the Uniprot. I mean there is no 'pnt' in the sequence.
Thank you very much!
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I am still a bit confused about this file.Take the first senqunece 'A0A016RYG7' in the 'gpcr_uniprot2triplets.json' as an example,there are 210 conserved positions. I don't understand how to get the distilled triplets of 'A0A016RYG7' like 'pnt ntp tpl pls' at the start because it seems no relation between the sequence of 'A0A016RYG7' in the Uniprot. I mean there is no 'pnt' in the sequence.
Thank you very much!