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Xinglab / TideHunter

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
https://github.com/yangao07/TideHunter
MIT License
20 stars 2 forks source link

TideHunter -f 2 with no result #14

Open xuzaoxu opened 2 years ago

xuzaoxu commented 2 years ago

Hi,

I installed TideHunter by conda. chr9_sub.fa length is 0.5Mbp. The server memory size is 128G. TideHunter version is 1.5.3. When I used command "TideHunter -f 2 chr9_sub.fa > chr9.cons.out" to generate consensus sequences in tabular format, no output result. error message is "Illegal instruction (core dumped)". However, command "TideHunter -u -f 2 chr9_sub.fa > chr9.unit.out" works well. I don't know how to fix it. Thanks in advance.

yangao07 commented 2 years ago

Hi,

Can you share the sequence?

Yan

xuzaoxu commented 2 years ago

chr8.txt I even tried 0.2Mbp, still not work.

yangao07 commented 2 years ago

I think the latest commit will just work. Try this:

git clone --recursive https://github.com/yangao07/TideHunter.git
cd TideHunter; make
./bin/TideHunter
xuzaoxu commented 2 years ago

I tested on another computer, command work out fine. Thank you.