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Update to version beta1.3.0
#2
Closed
EricKutschera
closed
2 years ago
EricKutschera
commented
2 years ago
Add scripts to split reads for ESPRESSO_C jobs
Improve how read and SJ inputs are given to blast
Estimate blast runtime based on number of reads and SJs
Add threads to ESPRESSO_Q
Create a pool of worker threads at the beginning of ESPRESSO_S
Only check certain single exon isoforms for each group
Use a consistent order for iteration during the EM algorithm
Use a consistent sort order when considering additional junctions
Sort SJ clusters by both start and end coordinate
Add script to compare output files from different ESPRESSO runs
Add version information to gtf output
Generalize reference file download in snakemake
Update snakemake version for fix for large number of files in command line
Add config param (guppy_gpu) to allow running guppy on a GPU
Require perl module Storable >= 3.00
EricKutschera
commented
2 years ago
Change was manually reverted