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The use of espresso #43

Open junjiemama opened 7 months ago

junjiemama commented 7 months ago

Hello, can I use espresso to analyze Pacbio seq data? After reading the paper, I got an impression that the pipeline is designed for the Nanopore seq. I really enjoyed using this pipeline, but I just want to make sure that I am using it for the correct dataset. Thank you very much!

EricKutschera commented 7 months ago

Yes, you can use ESPRESSO with Pacbio data. ESPRESSO only requires aligned long reads and genome reference files as input. ESPRESSO was developed using Nanopore data, but aligned reads from Pacbio should also work fine

junjiemama commented 7 months ago

Thank you for your fast reply! It is good to hear the confirmation.