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Xinglab / espresso

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run test errors #44

Closed Jean497 closed 3 months ago

Jean497 commented 10 months ago

$ ./run_tests Traceback (most recent call last): File "espresso-main/tool/tests/runner.py", line 3, in import tests.alignments.test as alignments_test File "espresso-main/tool/tests/alignments/test.py", line 5, in import tests.base_test File "espresso-main/tool/tests/base_test.py", line 14 DEFAULT_INTRON_LENGTH = (100, 1_000) ^ SyntaxError: invalid syntax

I like your pipeline, but there is some test errors in your scripts

EricKutschera commented 10 months ago

Here's the line for that error: https://github.com/Xinglab/espresso/blob/v1.4.0/tests/base_test.py#L14

It's using _ to separate the thousands in 1_000. That feature is added in python3.6: https://peps.python.org/pep-0515/ If you use python version 3.6 or later then that error should go away