EricKutschera
commented
8 months ago Here's the line for that error: https://github.com/Xinglab/espresso/blob/v1.4.0/tests/base_test.py#L14
It's using _ to separate the thousands in 1_000. That feature is added in python3.6: https://peps.python.org/pep-0515/
If you use python version 3.6 or later then that error should go away
$ ./run_tests Traceback (most recent call last): File "espresso-main/tool/tests/runner.py", line 3, in
import tests.alignments.test as alignments_test
File "espresso-main/tool/tests/alignments/test.py", line 5, in
import tests.base_test
File "espresso-main/tool/tests/base_test.py", line 14
DEFAULT_INTRON_LENGTH = (100, 1_000)
^
SyntaxError: invalid syntax
I like your pipeline, but there is some test errors in your scripts