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Update to version 1.5.0
#67
Closed
EricKutschera
closed
3 months ago
EricKutschera
commented
3 months ago
Use Smith-Waterman in the C step instead of blastn
Add --blast option to use blastn as in v1.4.0
Use annotated gene coordinates to split reads into groups
Add --alignment_read_groups option to use alignment-based read groups as in v1.4.0
Refactor ESPRESSO Q to reduce memory usage
Add script to output corrected SAM files
Add parasail library and perl module to install script
Use sort info when checking single-exon reads against isoforms
Include the sample for each read in intermediate files
Update estimates of time and memory usage in the README