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location of the deconvoluted spots #57

Open chrkuo opened 9 months ago

chrkuo commented 9 months ago

Hi,

I am wondering after deconvolution is it possible to see which specific "spot" has what proportions of cell types and in return look at that spots gene enrichment and do a correlation analysis.

chrkuo commented 9 months ago

@YingMa0107 wanted to see if you have any response to this?

YMalab commented 3 months ago

Hi @chrkuo,

Based on your question, you can select the spots based on your threshold on the estimated cell type proportions, and then perform downstream correlation analysis with the gene sets.

Best, Ying