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YMa-lab / CARD

GNU General Public License v3.0
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Error in CARD.visualize.gene #59

Closed lindsdudley closed 7 months ago

lindsdudley commented 8 months ago

Hi developers,

Thank you so much for creating this app. While running the tutorial I ran into an error when trying to use the CARD.visualize.gene function. I use the function exactly as it is shown in the tutorial but I get an error that the gene I am looking for is not there. To double check things I looked at head(CARD_obj@refined_expression) and it came out being all numbers.

head(CARD_obj@refined_expression) 73x160 79.2x160 85.4x160 91.6x160 97.8x160 104x160 110.2x160 116.4x160 122.6x160 128.8x160 135x160 141.2x160 147.4x160 153.6x160 159.8x160 166x160 172.2x160 178.4x160 184.6x160 190.8x160 197x160 203.2x160 209.4x160 215.6x160 221.8x160 228x160 234.2x160 240.4x160 246.6x160 252.8x160 259x160 265.2x160 271.4x160 277.6x160 283.8x160 290x160 296.2x160 302.4x160 308.6x160 314.8x160 321x160 327.2x160 73x166.2 79.2x166.2 85.4x166.2 91.6x166.2 97.8x166.2 104x166.2 110.2x166.2 116.4x166.2 122.6x166.2 128.8x166.2 135x166.2 141.2x166.2 147.4x166.2 153.6x166.2 159.8x166.2 166x166.2 172.2x166.2 178.4x166.2 184.6x166.2 190.8x166.2 197x166.2 203.2x166.2 209.4x166.2 215.6x166.2 221.8x166.2 228x166.2 234.2x166.2 240.4x166.2 246.6x166.2 252.8x166.2 259x166.2 265.2x166.2 271.4x166.2 277.6x166.2 283.8x166.2

Please let me know what I can do to make the refined gene expression actual gene names.

Best, Lindsey