YalamanchiliLab / PolyAMiner-Bulk

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issue downloading DESeq2 dependency "curl" #3

Closed michelle-dias closed 1 year ago

michelle-dias commented 1 year ago

Had an issue installing the R package "curl", which is a DESeq2 dependency. This package requires "libcurl" to be installed server-wide and the libcurl.py file to be in the pkg-config file on path in conda environment.

Initially had miniconda as default conda, and the libcurl.py file was being listed in the anaconda pkg-config instead of miniconda pkg-config. Issue was fixed by creating a cpasbert environment that specifically used anaconda instead of miniconda.

conda create --name cpasbert_anaconda anaconda=2023.03 python=3.9